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SourceForge net bbduk shell script
Bbduk Shell Script, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bbduk+shell+script/bbduk+sh/pm37676521-351-18-33
Average 90 stars, based on 1 article reviews
bbduk shell script - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Inositol Pyrophosphate InsP 8 Acts as an Intracellular Phosphate Signal in Arabidopsis.
Article Snippet: The raw reads were processed using the 393 bbduk shell script that is provided along with the bbmap suite of tools (version 38.00; 394 https://sourceforge.net/projects/bbmap/files/).

Article Title: High transcriptome plasticity drives phosphate starvation responses in tomato
Article Snippet: The raw reads were quality filtered using the bbduk shell script that is provided along with the bbmap suite of tools (version 38.00; https://sourceforge.net/projects/bbmap/files/ ) with the following parameters: ktrim = r k = 23 mink = 11 hdist = 1 tpe tbo for adapter trimming followed by quality trimming with qtrim = rl trimq = 20 minlen = 25.

Gene Expression:

Article Title: High transcriptome plasticity drives phosphate starvation responses in tomato.
Article Snippet: Paired-end (150 bp) sequencing was performed using Illumina reagents at the Genomics Core Facility at the Shanghai Center for Plant Stress Biology following the manufacturer’s instructions. .. Read mapping, transcript assembly, quantification and differential gene expression analysis The raw reads were quality filtered using the bbduk shell script that is provided along with the bbmap suite of tools (version 38.00; https://sourceforge.net/projects/ bbmap/files/) with the following parameters: ktrim = r k = 23 mink = 11 hdist = 1 tpe tbo for adapter trimming followed by quality trimming with qtrim = rl trimq = 20 minlen = 25. .. Clean reads were mapped to the tomato genome build SL2.50 and the associated annotation (ITAG2.4) GTF file obtained from EnsemblPlants (http://plants.ensembl.org/Solanum_lycopersicum/Info/ Index) using STAR version 2.5.3a (Dobin et al. 2013) with default parameters.



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SourceForge net bbduk shell script
Bbduk Shell Script, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/bbduk+shell+script/bbduk+sh/pm37676521-351-18-33
Average 90 stars, based on 1 article reviews
bbduk shell script - by Bioz Stars, 2026-10
90/100 stars
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